Variant report

Variant	rs722278
Chromosome Location	chr7:103595363-103595364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10230806	0.80[CEU][hapmap]
rs12705172	0.95[MEX][hapmap];0.84[AMR][1000 genomes]
rs34341126	0.82[EUR][1000 genomes]
rs35947606	0.82[AMR][1000 genomes]
rs4407801	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4727580	0.82[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4727581	0.82[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4727582	0.90[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs4727583	0.90[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs6943822	0.90[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs722277	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809970	0.85[CEU][hapmap];0.82[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs722278	AP1S1	cis	cerebellum	SCAN
rs722278	PIK3CG	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103584800-103596800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:103585400-103596000	Weak transcription	HepG2	liver
3	chr7:103590600-103597200	Weak transcription	K562	blood
4	chr7:103595000-103596600	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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