Variant report

Variant	rs12705172
Chromosome Location	chr7:103600984-103600985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17313716	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs35947606	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4407801	0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs4727582	1.00[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4727583	1.00[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6943822	1.00[CEU][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs722277	0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs722278	0.95[MEX][hapmap];0.84[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12705172	PIK3CG	cis	cerebellum	SCAN
rs12705172	AP1S1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103598200-103602800	Weak transcription	Fetal Heart	heart
2	chr7:103599000-103604200	Weak transcription	K562	blood
3	chr7:103599000-103607800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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