Variant report

Variant	rs17313716
Chromosome Location	chr7:103601382-103601383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10256985	0.83[MEX][hapmap]
rs10272734	0.87[MEX][hapmap]
rs11984351	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12705172	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs34341126	0.81[AMR][1000 genomes]
rs35947606	0.83[EUR][1000 genomes]
rs4358742	0.87[MEX][hapmap]
rs4460306	0.87[MEX][hapmap]
rs4727580	0.81[TSI][hapmap]
rs4727581	0.81[TSI][hapmap]
rs4727582	0.81[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs4727583	0.81[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs6943822	0.81[CEU][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs6950391	0.83[MEX][hapmap]
rs6975344	0.88[CEU][hapmap];0.91[GIH][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs7809970	0.91[MEX][hapmap];0.81[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17313716	PIK3CG	cis	cerebellum	SCAN
rs17313716	ATXN7L1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103598200-103602800	Weak transcription	Fetal Heart	heart
2	chr7:103599000-103604200	Weak transcription	K562	blood
3	chr7:103599000-103607800	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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