Variant report

Variant	rs6977994
Chromosome Location	chr7:105035958-105035959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105026975..105030937-chr7:105032940..105036440,7	K562	blood:
2	chr7:105027141..105031088-chr7:105032244..105036688,5	MCF-7	breast:
3	chr7:105027206..105036314-chr7:105036751..105044757,13	K562	blood:
4	chr7:105030763..105032789-chr7:105035167..105036681,2	K562	blood:

Variant related genes	Relation type
ENSG00000135250	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10224539	0.90[EUR][1000 genomes]
rs10267939	0.84[EUR][1000 genomes]
rs10953475	0.90[EUR][1000 genomes]
rs1135958	0.84[EUR][1000 genomes]
rs1204061	0.86[EUR][1000 genomes]
rs12155184	0.86[EUR][1000 genomes]
rs12155351	0.86[EUR][1000 genomes]
rs12530690	0.91[EUR][1000 genomes]
rs12532134	0.86[EUR][1000 genomes]
rs12532188	0.85[EUR][1000 genomes]
rs12532201	0.83[EUR][1000 genomes]
rs12532268	0.84[EUR][1000 genomes]
rs12533264	0.90[EUR][1000 genomes]
rs12533348	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12534381	0.88[EUR][1000 genomes]
rs12535338	0.87[EUR][1000 genomes]
rs12536794	0.91[EUR][1000 genomes]
rs12537196	0.85[EUR][1000 genomes]
rs12537307	0.84[EUR][1000 genomes]
rs12538590	0.82[EUR][1000 genomes]
rs1468359	0.86[EUR][1000 genomes]
rs17270450	0.91[EUR][1000 genomes]
rs17342493	0.91[EUR][1000 genomes]
rs17640508	0.81[EUR][1000 genomes]
rs17640599	0.85[EUR][1000 genomes]
rs17640644	0.86[EUR][1000 genomes]
rs17640711	0.86[EUR][1000 genomes]
rs17707802	0.81[EUR][1000 genomes]
rs17707878	0.85[EUR][1000 genomes]
rs17708070	0.89[EUR][1000 genomes]
rs2040915	0.90[EUR][1000 genomes]
rs2079340	0.82[EUR][1000 genomes]
rs2079341	0.83[EUR][1000 genomes]
rs2299309	0.81[EUR][1000 genomes]
rs2299327	0.85[EUR][1000 genomes]
rs2299328	0.85[EUR][1000 genomes]
rs2385557	0.91[EUR][1000 genomes]
rs3087867	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs35787127	0.85[EUR][1000 genomes]
rs3801279	0.85[EUR][1000 genomes]
rs4406343	0.83[EUR][1000 genomes]
rs4605996	0.80[EUR][1000 genomes]
rs55949446	0.85[EUR][1000 genomes]
rs56132497	0.86[EUR][1000 genomes]
rs56251298	0.89[EUR][1000 genomes]
rs56269269	0.81[EUR][1000 genomes]
rs56281713	0.83[EUR][1000 genomes]
rs56338352	0.85[EUR][1000 genomes]
rs57599523	0.91[EUR][1000 genomes]
rs6466048	0.82[EUR][1000 genomes]
rs6466049	0.81[EUR][1000 genomes]
rs6466050	0.82[EUR][1000 genomes]
rs6466051	0.82[EUR][1000 genomes]
rs6466061	0.91[EUR][1000 genomes]
rs66469172	0.85[EUR][1000 genomes]
rs66482905	0.90[EUR][1000 genomes]
rs66638610	0.90[EUR][1000 genomes]
rs66912872	0.86[EUR][1000 genomes]
rs67154126	0.86[EUR][1000 genomes]
rs67162771	0.86[EUR][1000 genomes]
rs67505443	0.81[EUR][1000 genomes]
rs67529088	0.85[EUR][1000 genomes]
rs67620169	0.82[EUR][1000 genomes]
rs67780803	0.90[EUR][1000 genomes]
rs67909511	0.91[EUR][1000 genomes]
rs6942483	0.86[EUR][1000 genomes]
rs6945585	0.85[EUR][1000 genomes]
rs6950104	0.82[EUR][1000 genomes]
rs6952458	0.88[EUR][1000 genomes]
rs6954293	0.84[EUR][1000 genomes]
rs6954421	0.85[EUR][1000 genomes]
rs6954692	0.85[EUR][1000 genomes]
rs6954777	0.85[EUR][1000 genomes]
rs6954830	0.85[EUR][1000 genomes]
rs6954844	0.84[EUR][1000 genomes]
rs6955133	0.85[EUR][1000 genomes]
rs6958609	0.85[EUR][1000 genomes]
rs6963624	0.85[EUR][1000 genomes]
rs6963661	0.86[EUR][1000 genomes]
rs6968238	0.81[EUR][1000 genomes]
rs6972563	0.81[EUR][1000 genomes]
rs6973708	0.80[EUR][1000 genomes]
rs6974780	0.86[EUR][1000 genomes]
rs6974874	0.81[EUR][1000 genomes]
rs6974890	0.86[EUR][1000 genomes]
rs6978954	0.84[EUR][1000 genomes]
rs6979284	0.86[EUR][1000 genomes]
rs73186041	0.86[EUR][1000 genomes]
rs73186054	0.85[EUR][1000 genomes]
rs7780006	0.86[EUR][1000 genomes]
rs7782673	0.86[EUR][1000 genomes]
rs7782827	0.84[EUR][1000 genomes]
rs7790653	0.85[EUR][1000 genomes]
rs7796274	0.84[EUR][1000 genomes]
rs7796945	0.81[EUR][1000 genomes]
rs7797988	0.83[EUR][1000 genomes]
rs7801685	0.81[EUR][1000 genomes]
rs7802168	0.85[EUR][1000 genomes]
rs7802568	0.84[EUR][1000 genomes]
rs7805639	0.91[EUR][1000 genomes]
rs7805928	0.86[EUR][1000 genomes]
rs7808226	0.86[EUR][1000 genomes]
rs7809329	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7809464	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv932138	chr7:104826194-105152816	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1029832	chr7:104905057-105112489	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
12	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	nsv1034689	chr7:104950564-105085879	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv1022065	chr7:104997315-105190662	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
15	nsv888929	chr7:105012975-105163091	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
16	nsv888930	chr7:105012975-105170476	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
17	nsv888931	chr7:105012975-105173974	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
18	nsv888932	chr7:105012975-105179756	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
19	nsv888933	chr7:105012975-105193051	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
20	nsv888934	chr7:105016900-105056010	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	esv3436858	chr7:105017550-105044209	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
22	nsv1018975	chr7:105018374-105153618	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
23	nsv539050	chr7:105018374-105153618	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv1023564	chr7:105018484-105182998	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105030000-105038000	Weak transcription	Right Atrium	heart
2	chr7:105030400-105039000	Weak transcription	HepG2	liver

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