Variant report

Variant	rs6979871
Chromosome Location	chr7:116693382-116693383
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:115924626-115929516..7:116692054-116693495	Hela-S3	cervix:
2	7:116434729-116454408..7:116692054-116693495	Hela-S3	cervix:
3	chr7:116683661..116685296-chr7:116691714..116693908,2	K562	blood:
4	7:116544149-116547624..7:116692054-116693495	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000237870	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000105971	Chromatin interaction

rs_ID	r²[population]
rs11980673	0.83[AMR][1000 genomes]
rs11982484	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs34070870	0.83[AMR][1000 genomes]
rs6951632	0.83[AMR][1000 genomes]
rs6966560	1.00[YRI][hapmap]
rs73475008	0.83[AMR][1000 genomes]
rs73477363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477370	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7788974	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs7793358	0.83[AMR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116686600-116701200	Weak transcription	HSMMtube	muscle
2	chr7:116686800-116712400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:116688000-116694600	Weak transcription	Brain Germinal Matrix	brain
4	chr7:116688000-116697000	Weak transcription	Fetal Lung	lung
5	chr7:116689400-116693600	Weak transcription	Right Ventricle	heart
6	chr7:116689800-116693400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:116690000-116693600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:116690600-116701200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:116690600-116711600	Weak transcription	K562	blood
10	chr7:116690800-116693600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:116691200-116694400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:116691800-116693400	Weak transcription	Left Ventricle	heart
13	chr7:116691800-116693400	Weak transcription	Right Atrium	heart
14	chr7:116691800-116702000	Weak transcription	Pancreas	Pancrea
15	chr7:116692000-116693400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:116692000-116693400	Weak transcription	Aorta	Aorta
17	chr7:116692000-116693400	Weak transcription	Gastric	stomach
18	chr7:116692000-116693400	Weak transcription	Ovary	ovary
19	chr7:116692000-116693400	Weak transcription	NHDF-Ad	bronchial
20	chr7:116692000-116693400	Weak transcription	Osteobl	bone
21	chr7:116692000-116696200	Weak transcription	Spleen	Spleen
22	chr7:116692200-116693400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr7:116692200-116693600	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:116692200-116702000	Weak transcription	Psoas Muscle	Psoas
25	chr7:116692400-116693400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:116692400-116693400	Weak transcription	Brain Anterior Caudate	brain
27	chr7:116692400-116693400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:116692400-116693400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr7:116692400-116693400	Weak transcription	Brain Substantia Nigra	brain
30	chr7:116692400-116693400	Weak transcription	Colon Smooth Muscle	Colon
31	chr7:116692400-116704600	Weak transcription	GM12878-XiMat	blood
32	chr7:116692800-116693600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:116693000-116694800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:116693200-116693800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:116693200-116693800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:116693200-116694600	Enhancers	Brain Angular Gyrus	brain

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