Variant report

Variant	rs73477369
Chromosome Location	chr7:116717164-116717165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr7:116717124-116717430	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ST7-AS2	TF binding region

rs_ID	r²[population]
rs11980673	0.83[AMR][1000 genomes]
rs11982484	0.83[AMR][1000 genomes]
rs34070870	0.83[AMR][1000 genomes]
rs6951632	0.83[AMR][1000 genomes]
rs6979871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73475008	0.83[AMR][1000 genomes]
rs73477363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477370	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7788974	0.83[AMR][1000 genomes]
rs7793358	0.83[AMR][1000 genomes]

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116711600-116718200	Enhancers	Fetal Heart	heart
2	chr7:116712000-116724200	Weak transcription	K562	blood
3	chr7:116713200-116723800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:116713200-116723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:116713200-116723800	Weak transcription	Brain Angular Gyrus	brain
7	chr7:116713200-116730800	Weak transcription	Aorta	Aorta
8	chr7:116713400-116717600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:116713400-116721000	Weak transcription	HUVEC	blood vessel
10	chr7:116714000-116717200	Weak transcription	Stomach Mucosa	stomach
11	chr7:116714600-116723400	Weak transcription	Gastric	stomach
12	chr7:116715400-116717400	Enhancers	Right Ventricle	heart
13	chr7:116715400-116717400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr7:116715600-116717200	ZNF genes & repeats	GM12878-XiMat	blood
15	chr7:116715600-116719200	Enhancers	Liver	Liver
16	chr7:116715800-116731800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:116716000-116717200	Enhancers	Right Atrium	heart
18	chr7:116716200-116717400	Enhancers	Pancreas	Pancrea
19	chr7:116716400-116717400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:116716600-116717200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:116716600-116717200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:116716600-116717200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
23	chr7:116716600-116717200	Enhancers	Hela-S3	cervix
24	chr7:116716600-116717200	Flanking Active TSS	HepG2	liver
25	chr7:116716600-116717400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:116716600-116717400	Enhancers	Brain Substantia Nigra	brain
27	chr7:116716600-116717400	Enhancers	Left Ventricle	heart
28	chr7:116716800-116717400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:116716800-116723800	Weak transcription	Esophagus	oesophagus
30	chr7:116716800-116725400	Weak transcription	Brain Anterior Caudate	brain
31	chr7:116716800-116727800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:116717000-116717200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr7:116717000-116717400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr7:116717000-116717400	Enhancers	Fetal Brain Male	brain
35	chr7:116717000-116718200	Weak transcription	Fetal Stomach	stomach
36	chr7:116717000-116724000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:116717000-116727000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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