Variant report

Variant	rs7788974
Chromosome Location	chr7:116631013-116631014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11980673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11982484	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34070870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6951632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966560	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6979871	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs73475008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477363	0.83[AMR][1000 genomes]
rs73477369	0.83[AMR][1000 genomes]
rs73477370	0.83[AMR][1000 genomes]
rs7776604	1.00[MEX][hapmap]
rs7789152	1.00[MEX][hapmap]
rs7793358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116597000-116641600	Weak transcription	Ovary	ovary
2	chr7:116607600-116632400	Weak transcription	Gastric	stomach
3	chr7:116610600-116638800	Weak transcription	Hela-S3	cervix
4	chr7:116612000-116632000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:116613600-116635600	Weak transcription	Pancreas	Pancrea
6	chr7:116613600-116647000	Weak transcription	Right Atrium	heart
7	chr7:116622600-116633600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:116623800-116635000	Weak transcription	Left Ventricle	heart
9	chr7:116624400-116632000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:116627400-116635000	Weak transcription	Fetal Heart	heart
11	chr7:116627600-116632000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:116627600-116634200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:116627600-116639000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:116627800-116638000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:116627800-116648200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:116627800-116648800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:116630200-116632800	ZNF genes & repeats	GM12878-XiMat	blood
18	chr7:116630400-116632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links