Variant report

Variant	rs6980696
Chromosome Location	chr8:66924993-66924994
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16932400	0.83[AFR][1000 genomes]
rs2357573	0.83[AFR][1000 genomes]
rs55947988	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57028955	0.81[AFR][1000 genomes]
rs58772235	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58975338	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59084420	0.83[AFR][1000 genomes]
rs60229346	0.81[AFR][1000 genomes]
rs6472243	0.81[AFR][1000 genomes]
rs7001194	0.83[AFR][1000 genomes]
rs73691258	0.81[AFR][1000 genomes]
rs73691260	0.83[AFR][1000 genomes]
rs7814366	0.81[AFR][1000 genomes]
rs7838339	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66916400-66930600	Weak transcription	Thymus	Thymus
2	chr8:66922600-66927800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:66922800-66926800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:66922800-66933000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:66923000-66926200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr8:66923000-66927200	Weak transcription	Primary T cells from cord blood	blood
7	chr8:66923000-66927200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:66923000-66930600	Weak transcription	Fetal Thymus	thymus
9	chr8:66923200-66926600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr8:66923200-66927000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr8:66923200-66931200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr8:66923200-66934400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:66923200-66934600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:66923400-66925800	Weak transcription	GM12878-XiMat	blood
15	chr8:66923400-66926200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:66923400-66926200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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