Variant report

Variant	rs58772235
Chromosome Location	chr8:66943809-66943810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66931541..66933360-chr8:66943140..66945695,2	MCF-7	breast:
2	chr8:66860378..66862946-chr8:66940064..66944249,3	MCF-7	breast:
3	chr8:66750304..66757030-chr8:66936519..66946979,24	MCF-7	breast:
4	chr8:66743264..66756293-chr8:66938648..66949139,49	MCF-7	breast:
5	chr8:66939130..66942548-chr8:66942805..66946877,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10090644	1.00[EUR][1000 genomes]
rs11989903	1.00[EUR][1000 genomes]
rs16932400	1.00[EUR][1000 genomes]
rs2357573	1.00[EUR][1000 genomes]
rs55658547	1.00[EUR][1000 genomes]
rs55947988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56158968	1.00[EUR][1000 genomes]
rs56316549	1.00[EUR][1000 genomes]
rs56338345	1.00[EUR][1000 genomes]
rs56781848	1.00[EUR][1000 genomes]
rs57028955	1.00[EUR][1000 genomes]
rs57400902	1.00[EUR][1000 genomes]
rs57598287	1.00[EUR][1000 genomes]
rs58852265	1.00[EUR][1000 genomes]
rs58975338	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59084420	1.00[EUR][1000 genomes]
rs59461929	1.00[EUR][1000 genomes]
rs59658032	1.00[EUR][1000 genomes]
rs59865117	1.00[EUR][1000 genomes]
rs59967440	1.00[EUR][1000 genomes]
rs60088935	1.00[EUR][1000 genomes]
rs60229346	1.00[EUR][1000 genomes]
rs60706814	1.00[EUR][1000 genomes]
rs61571778	1.00[EUR][1000 genomes]
rs6472243	1.00[EUR][1000 genomes]
rs6980696	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001194	1.00[EUR][1000 genomes]
rs73691210	1.00[EUR][1000 genomes]
rs73691221	1.00[EUR][1000 genomes]
rs73691248	1.00[EUR][1000 genomes]
rs73691253	1.00[EUR][1000 genomes]
rs73691255	1.00[EUR][1000 genomes]
rs73691258	1.00[EUR][1000 genomes]
rs73691260	1.00[EUR][1000 genomes]
rs73691266	0.81[AFR][1000 genomes]
rs73693441	1.00[EUR][1000 genomes]
rs7814366	1.00[EUR][1000 genomes]
rs7834695	1.00[EUR][1000 genomes]
rs7836629	0.81[AFR][1000 genomes]
rs7838339	0.80[AFR][1000 genomes]
rs7839572	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66933800-66944400	Weak transcription	Pancreas	Pancrea
2	chr8:66934000-66944400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:66935400-66945800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:66938600-66945800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:66938600-66946400	Enhancers	Fetal Thymus	thymus
6	chr8:66938600-66946600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr8:66938600-66946800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr8:66938800-66945400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr8:66938800-66945600	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:66938800-66946400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:66939000-66944400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr8:66939200-66944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:66939200-66944400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:66939600-66944000	Weak transcription	NHDF-Ad	bronchial
15	chr8:66939600-66944400	Weak transcription	NHLF	lung
16	chr8:66939600-66952800	Weak transcription	Psoas Muscle	Psoas
17	chr8:66940000-66944800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:66940000-66945000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:66940000-66945200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:66940200-66946000	Enhancers	Thymus	Thymus
21	chr8:66940400-66944600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr8:66940400-66945400	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:66940600-66944400	Weak transcription	Hela-S3	cervix
24	chr8:66940800-66944000	Weak transcription	A549	lung
25	chr8:66941000-66944600	Weak transcription	Placenta	Placenta
26	chr8:66941000-66945400	Weak transcription	Dnd41	blood
27	chr8:66941400-66944200	Enhancers	Primary T cells from cord blood	blood
28	chr8:66941400-66944400	Weak transcription	Esophagus	oesophagus
29	chr8:66941400-66945200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr8:66941600-66944200	Weak transcription	HMEC	breast
31	chr8:66941600-66944400	Weak transcription	Lung	lung
32	chr8:66941800-66944000	Weak transcription	NHEK	skin
33	chr8:66941800-66944400	Weak transcription	Spleen	Spleen
34	chr8:66941800-66945400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr8:66942000-66948200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr8:66942200-66944400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr8:66942200-66944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:66942200-66944400	Weak transcription	Small Intestine	intestine
39	chr8:66942400-66944400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr8:66942400-66944400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:66942400-66944400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr8:66942400-66944400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr8:66942600-66944400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:66942800-66944200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr8:66942800-66944200	Weak transcription	GM12878-XiMat	blood
46	chr8:66943400-66945800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr8:66943600-66944000	Weak transcription	Primary B cells from cord blood	blood
48	chr8:66943600-66945400	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr8:66943800-66944000	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr8:66943800-66945600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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