Variant report
| Variant | rs59461929 |
|---|---|
| Chromosome Location | chr8:66829181-66829182 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs16932400 | 1.00[EUR][1000 genomes] |
| rs2357573 | 1.00[EUR][1000 genomes] |
| rs55658547 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55947988 | 1.00[EUR][1000 genomes] |
| rs56158968 | 1.00[EUR][1000 genomes] |
| rs56316549 | 1.00[EUR][1000 genomes] |
| rs56338345 | 1.00[EUR][1000 genomes] |
| rs56781848 | 1.00[EUR][1000 genomes] |
| rs57028955 | 1.00[EUR][1000 genomes] |
| rs57400902 | 1.00[EUR][1000 genomes] |
| rs57598287 | 1.00[EUR][1000 genomes] |
| rs58772235 | 1.00[EUR][1000 genomes] |
| rs58852265 | 1.00[EUR][1000 genomes] |
| rs58975338 | 1.00[EUR][1000 genomes] |
| rs59084420 | 1.00[EUR][1000 genomes] |
| rs59658032 | 1.00[EUR][1000 genomes] |
| rs59865117 | 1.00[EUR][1000 genomes] |
| rs59967440 | 1.00[EUR][1000 genomes] |
| rs60088935 | 1.00[EUR][1000 genomes] |
| rs60229346 | 1.00[EUR][1000 genomes] |
| rs60706814 | 1.00[EUR][1000 genomes] |
| rs61571778 | 1.00[EUR][1000 genomes] |
| rs6472243 | 1.00[EUR][1000 genomes] |
| rs7001194 | 1.00[EUR][1000 genomes] |
| rs73691210 | 1.00[EUR][1000 genomes] |
| rs73691221 | 1.00[EUR][1000 genomes] |
| rs73691248 | 1.00[EUR][1000 genomes] |
| rs73691253 | 1.00[EUR][1000 genomes] |
| rs73691255 | 1.00[EUR][1000 genomes] |
| rs73691258 | 1.00[EUR][1000 genomes] |
| rs73691260 | 1.00[EUR][1000 genomes] |
| rs73693441 | 1.00[EUR][1000 genomes] |
| rs7814366 | 1.00[EUR][1000 genomes] |
| rs7834695 | 1.00[EUR][1000 genomes] |
| rs7839572 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023239 | chr8:66775321-66904124 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:66828200-66840600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
