Variant report
| Variant | rs60088935 |
|---|---|
| Chromosome Location | chr8:66813501-66813502 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:66813325..66814889-chr8:66819143..66821210,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs16932400 | 1.00[EUR][1000 genomes] |
| rs2357573 | 1.00[EUR][1000 genomes] |
| rs55658547 | 1.00[EUR][1000 genomes] |
| rs55947988 | 1.00[EUR][1000 genomes] |
| rs56158968 | 1.00[EUR][1000 genomes] |
| rs56316549 | 1.00[EUR][1000 genomes] |
| rs56338345 | 1.00[EUR][1000 genomes] |
| rs56781848 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57028955 | 1.00[EUR][1000 genomes] |
| rs57400902 | 1.00[EUR][1000 genomes] |
| rs57598287 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58772235 | 1.00[EUR][1000 genomes] |
| rs58852265 | 1.00[EUR][1000 genomes] |
| rs58975338 | 1.00[EUR][1000 genomes] |
| rs59084420 | 1.00[EUR][1000 genomes] |
| rs59461929 | 1.00[EUR][1000 genomes] |
| rs59658032 | 1.00[EUR][1000 genomes] |
| rs59865117 | 1.00[EUR][1000 genomes] |
| rs59967440 | 1.00[EUR][1000 genomes] |
| rs60229346 | 1.00[EUR][1000 genomes] |
| rs60706814 | 1.00[EUR][1000 genomes] |
| rs61571778 | 1.00[EUR][1000 genomes] |
| rs6472243 | 1.00[EUR][1000 genomes] |
| rs7001194 | 1.00[EUR][1000 genomes] |
| rs73691210 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73691221 | 1.00[EUR][1000 genomes] |
| rs73691248 | 1.00[EUR][1000 genomes] |
| rs73691253 | 1.00[EUR][1000 genomes] |
| rs73691255 | 1.00[EUR][1000 genomes] |
| rs73691258 | 1.00[EUR][1000 genomes] |
| rs73691260 | 1.00[EUR][1000 genomes] |
| rs73693441 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7814366 | 1.00[EUR][1000 genomes] |
| rs7834695 | 1.00[EUR][1000 genomes] |
| rs7839572 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446467 | chr8:66749863-67667068 | Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
| 2 | nsv1023239 | chr8:66775321-66904124 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3344263 | chr8:66811573-66813646 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:66811600-66813800 | Weak transcription | Fetal Intestine Small | intestine |
| 2 | chr8:66811800-66813600 | Enhancers | NHEK | skin |
| 3 | chr8:66812800-66813800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
