Variant report

Variant	rs57028955
Chromosome Location	chr8:66912188-66912189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10090644	1.00[EUR][1000 genomes]
rs16932400	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2357573	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55658547	1.00[EUR][1000 genomes]
rs55947988	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56158968	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56316549	1.00[EUR][1000 genomes]
rs56338345	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56781848	1.00[EUR][1000 genomes]
rs57400902	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57598287	1.00[EUR][1000 genomes]
rs58772235	1.00[EUR][1000 genomes]
rs58852265	1.00[EUR][1000 genomes]
rs58975338	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59084420	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59461929	1.00[EUR][1000 genomes]
rs59658032	1.00[EUR][1000 genomes]
rs59865117	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59967440	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60088935	1.00[EUR][1000 genomes]
rs60229346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60292147	0.82[AFR][1000 genomes]
rs60706814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61571778	1.00[EUR][1000 genomes]
rs6472243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6980696	0.81[AFR][1000 genomes]
rs7001194	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691210	1.00[EUR][1000 genomes]
rs73691221	1.00[EUR][1000 genomes]
rs73691248	1.00[EUR][1000 genomes]
rs73691253	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691255	1.00[EUR][1000 genomes]
rs73691258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691260	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693441	1.00[EUR][1000 genomes]
rs7814366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834695	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838339	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7839572	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66909800-66915400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr8:66909800-66915400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:66910000-66912200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr8:66910000-66914000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr8:66910000-66915800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr8:66910000-66916200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr8:66910200-66912200	Enhancers	Fetal Thymus	thymus
8	chr8:66910200-66914200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr8:66910200-66914600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:66910200-66915200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:66910200-66915600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr8:66910200-66917800	Enhancers	Primary T cells from cord blood	blood
13	chr8:66910400-66913800	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:66910600-66912800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:66911600-66912800	Enhancers	Hela-S3	cervix
16	chr8:66911800-66912800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr8:66911800-66912800	Weak transcription	Thymus	Thymus
18	chr8:66911800-66912800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr8:66911800-66917200	Weak transcription	Small Intestine	intestine
20	chr8:66912000-66912200	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr8:66912000-66913000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr8:66912000-66917000	Weak transcription	Fetal Intestine Large	intestine
23	chr8:66912000-66917000	Weak transcription	Fetal Intestine Small	intestine
24	chr8:66912000-66918400	Weak transcription	Primary B cells from cord blood	blood

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