Variant report

Variant	rs60706814
Chromosome Location	chr8:66890615-66890616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16932400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2357573	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55658547	1.00[EUR][1000 genomes]
rs55947988	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56158968	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56316549	1.00[EUR][1000 genomes]
rs56338345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56781848	1.00[EUR][1000 genomes]
rs57028955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57400902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57598287	1.00[EUR][1000 genomes]
rs58772235	1.00[EUR][1000 genomes]
rs58852265	1.00[EUR][1000 genomes]
rs58975338	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59084420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59461929	1.00[EUR][1000 genomes]
rs59658032	1.00[EUR][1000 genomes]
rs59865117	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59967440	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60088935	1.00[EUR][1000 genomes]
rs60229346	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60292147	0.80[AFR][1000 genomes]
rs61571778	1.00[EUR][1000 genomes]
rs6472243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7001194	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691210	1.00[EUR][1000 genomes]
rs73691221	1.00[EUR][1000 genomes]
rs73691248	1.00[EUR][1000 genomes]
rs73691253	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691255	1.00[EUR][1000 genomes]
rs73691258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73691260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73693441	1.00[EUR][1000 genomes]
rs7814366	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7834695	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7838339	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7839572	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66878800-66893600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr8:66886600-66892600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr8:66886600-66893600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:66887200-66893600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr8:66887400-66893400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:66887400-66893600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:66890000-66890800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:66890200-66890800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:66890600-66896800	Enhancers	Primary B cells from peripheral blood	blood

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