Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1440289	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17064790	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17064798	0.83[AMR][1000 genomes]
rs17685247	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17752483	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17752495	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17752600	0.86[AMR][1000 genomes]
rs1866722	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5028635	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57245404	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60167642	0.88[AMR][1000 genomes]
rs60880349	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62501423	0.88[AMR][1000 genomes]
rs62501424	0.88[AMR][1000 genomes]
rs6558614	0.85[AMR][1000 genomes]
rs7002753	0.89[EUR][1000 genomes]
rs7007222	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7015065	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7016542	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73555982	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7464271	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7812397	0.88[AMR][1000 genomes]
rs7828468	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6981174	FBXO25	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
2	chr8:2101000-2118000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:2104600-2122200	Weak transcription	Fetal Thymus	thymus
4	chr8:2110200-2113600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:2110200-2113600	Weak transcription	Pancreas	Pancrea
6	chr8:2110200-2116600	Weak transcription	Left Ventricle	heart
7	chr8:2111600-2113600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:2112000-2113600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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