Variant report

Variant	rs7015065
Chromosome Location	chr8:2108039-2108040
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11136467	1.00[CHD][hapmap]
rs11136474	1.00[ASN][1000 genomes]
rs11787288	1.00[ASN][1000 genomes]
rs12156403	1.00[ASN][1000 genomes]
rs1440289	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17064790	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17064792	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17064798	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs17064803	0.81[EUR][1000 genomes]
rs17064809	1.00[ASN][1000 genomes]
rs17064834	1.00[ASN][1000 genomes]
rs17684901	1.00[ASN][1000 genomes]
rs17685247	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17685391	1.00[ASN][1000 genomes]
rs17685398	1.00[ASN][1000 genomes]
rs17752131	1.00[ASN][1000 genomes]
rs17752418	1.00[ASN][1000 genomes]
rs17752483	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752495	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17752600	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1822035	1.00[ASN][1000 genomes]
rs1866722	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399341	1.00[ASN][1000 genomes]
rs34025654	1.00[ASN][1000 genomes]
rs34834449	1.00[ASN][1000 genomes]
rs35244895	1.00[ASN][1000 genomes]
rs3824178	1.00[ASN][1000 genomes]
rs5028635	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55641345	1.00[ASN][1000 genomes]
rs57245404	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60167642	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60880349	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62479965	1.00[ASN][1000 genomes]
rs62480006	1.00[ASN][1000 genomes]
rs62500447	1.00[ASN][1000 genomes]
rs62501423	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62501424	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62501433	1.00[ASN][1000 genomes]
rs6558614	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6981174	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6994597	1.00[ASN][1000 genomes]
rs7002753	0.83[EUR][1000 genomes]
rs7007222	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7016542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555982	0.84[EUR][1000 genomes]
rs7464271	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812397	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7828468	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7832635	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7015065	FBXO25	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
2	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
3	chr8:2101000-2118000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:2103600-2109600	Weak transcription	Left Ventricle	heart
5	chr8:2104400-2110200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:2104400-2110400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:2104600-2109400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:2104600-2110000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr8:2104600-2110600	Weak transcription	Primary T cells from cord blood	blood
10	chr8:2104600-2110600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr8:2104600-2122200	Weak transcription	Fetal Thymus	thymus
12	chr8:2104800-2109400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:2107200-2108200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr8:2107600-2108600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr8:2107800-2108200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr8:2107800-2109600	Weak transcription	Pancreas	Pancrea
17	chr8:2108000-2109600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:2108000-2109800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:2108000-2110200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr8:2108000-2110200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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