Variant report
| Variant | rs62500447 |
|---|---|
| Chromosome Location | chr8:2136804-2136805 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11136474 | 1.00[ASN][1000 genomes] |
| rs11787288 | 1.00[ASN][1000 genomes] |
| rs11990262 | 0.81[AMR][1000 genomes] |
| rs12156403 | 1.00[ASN][1000 genomes] |
| rs1440289 | 1.00[ASN][1000 genomes] |
| rs17064790 | 1.00[ASN][1000 genomes] |
| rs17064792 | 1.00[ASN][1000 genomes] |
| rs17064809 | 1.00[ASN][1000 genomes] |
| rs17064834 | 1.00[ASN][1000 genomes] |
| rs17684901 | 1.00[ASN][1000 genomes] |
| rs17685247 | 1.00[ASN][1000 genomes] |
| rs17685391 | 1.00[ASN][1000 genomes] |
| rs17685398 | 1.00[ASN][1000 genomes] |
| rs17752131 | 1.00[ASN][1000 genomes] |
| rs17752418 | 1.00[ASN][1000 genomes] |
| rs17752483 | 1.00[ASN][1000 genomes] |
| rs17752495 | 1.00[ASN][1000 genomes] |
| rs1822035 | 1.00[ASN][1000 genomes] |
| rs1866722 | 1.00[ASN][1000 genomes] |
| rs28399341 | 1.00[ASN][1000 genomes] |
| rs34025654 | 1.00[ASN][1000 genomes] |
| rs34834449 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35244895 | 1.00[ASN][1000 genomes] |
| rs3824178 | 1.00[ASN][1000 genomes] |
| rs5028635 | 1.00[ASN][1000 genomes] |
| rs55641345 | 1.00[ASN][1000 genomes] |
| rs57245404 | 1.00[ASN][1000 genomes] |
| rs60880349 | 1.00[ASN][1000 genomes] |
| rs62479965 | 1.00[ASN][1000 genomes] |
| rs62480006 | 1.00[ASN][1000 genomes] |
| rs62501433 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6994597 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7015065 | 1.00[ASN][1000 genomes] |
| rs7016542 | 1.00[ASN][1000 genomes] |
| rs7464271 | 1.00[ASN][1000 genomes] |
| rs7832635 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889712 | chr8:1591412-2337777 | Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:2135400-2138000 | Weak transcription | Fetal Brain Male | brain |
