Variant report

Variant	rs6986659
Chromosome Location	chr8:95817874-95817875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95813226..95816415-chr8:95816787..95819531,3	K562	blood:
2	chr8:95817537..95820508-chr8:95822218..95824582,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10086284	0.82[JPT][hapmap]
rs1011795	0.83[JPT][hapmap]
rs1011796	0.82[JPT][hapmap]
rs10956928	0.94[JPT][hapmap];0.83[YRI][hapmap]
rs10956929	0.95[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs10956930	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10956931	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs10956932	1.00[JPT][hapmap]
rs11784717	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs12541990	0.84[CEU][hapmap]
rs12545596	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs12548999	1.00[JPT][hapmap]
rs12549003	0.82[JPT][hapmap]
rs12550765	0.91[CEU][hapmap];0.84[YRI][hapmap]
rs12677346	0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12679044	0.88[JPT][hapmap]
rs1453379	0.82[JPT][hapmap]
rs2123647	1.00[JPT][hapmap]
rs2278891	0.95[CEU][hapmap];0.87[JPT][hapmap]
rs2945554	1.00[JPT][hapmap]
rs2956210	0.82[JPT][hapmap]
rs2956216	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs3019175	0.81[CEU][hapmap];0.94[JPT][hapmap]
rs3802193	0.82[JPT][hapmap]
rs4382440	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734291	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs4735328	0.91[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4735331	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4735332	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4735334	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs477653	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs550418	1.00[JPT][hapmap]
rs550564	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs551270	0.86[CEU][hapmap];1.00[JPT][hapmap]
rs6471497	0.92[CEU][hapmap];0.88[YRI][hapmap]
rs6471499	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs6471500	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs683832	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs6983000	0.81[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs6987256	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7001535	1.00[JPT][hapmap]
rs7005317	0.91[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7013163	0.85[ASN][1000 genomes]
rs7015841	1.00[JPT][hapmap]
rs7017487	1.00[JPT][hapmap]
rs7820818	0.84[CEU][hapmap];1.00[JPT][hapmap]
rs7827478	0.82[JPT][hapmap]
rs7845219	0.88[JPT][hapmap]
rs896851	0.82[JPT][hapmap]
rs9643353	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95810200-95818800	Weak transcription	K562	blood
2	chr8:95810200-95819600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:95815800-95826600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:95817000-95818000	Enhancers	Fetal Intestine Small	intestine
5	chr8:95817200-95818000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr8:95817200-95818400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:95817400-95818000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:95817400-95820800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:95817600-95818000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:95817600-95818000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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