Variant report

Variant	rs6987194
Chromosome Location	chr8:106998558-106998559
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16873771	1.00[AMR][1000 genomes]
rs57293369	1.00[AMR][1000 genomes]
rs6983543	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001540	1.00[AMR][1000 genomes]
rs7017814	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293419	1.00[AMR][1000 genomes]
rs73293443	1.00[AMR][1000 genomes]
rs73293445	1.00[AMR][1000 genomes]
rs73295385	1.00[AMR][1000 genomes]
rs7840961	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106991200-106999800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:106994400-107000000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:106997800-106998800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:106998000-106998800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:106998000-106998800	Enhancers	NH-A	brain
6	chr8:106998200-106998800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:106998400-106998800	Enhancers	A549	lung
8	chr8:106998400-106998800	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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