Variant report

Variant	rs73295385
Chromosome Location	chr8:107060510-107060511
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57293369	1.00[AMR][1000 genomes]
rs6983543	1.00[AMR][1000 genomes]
rs6987194	1.00[AMR][1000 genomes]
rs7017814	1.00[AMR][1000 genomes]
rs73293419	1.00[AMR][1000 genomes]
rs73293443	1.00[AMR][1000 genomes]
rs73293445	1.00[AMR][1000 genomes]
rs7840961	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107056400-107060800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107057000-107060600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:107057200-107060600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:107057200-107060800	Enhancers	NHDF-Ad	bronchial
6	chr8:107057200-107060800	Enhancers	Osteobl	bone
7	chr8:107058000-107060800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:107058600-107067400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:107058800-107060600	Enhancers	A549	lung
10	chr8:107059200-107072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:107059800-107060600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:107059800-107060800	Enhancers	NH-A	brain
13	chr8:107060000-107064000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:107060000-107067200	Weak transcription	Hela-S3	cervix
15	chr8:107060000-107067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:107060200-107060600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:107060200-107063400	Weak transcription	HUVEC	blood vessel
18	chr8:107060400-107067000	Weak transcription	NHLF	lung
19	chr8:107060400-107067400	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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