Variant report
| Variant | rs73293445 |
|---|---|
| Chromosome Location | chr8:106944889-106944890 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:106939707..106941922-chr8:106944290..106946976,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000201627 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1442323 | 1.00[AMR][1000 genomes] |
| rs1470220 | 1.00[AMR][1000 genomes] |
| rs16873771 | 1.00[AMR][1000 genomes] |
| rs57293369 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6983543 | 1.00[AMR][1000 genomes] |
| rs6987194 | 1.00[AMR][1000 genomes] |
| rs7001540 | 1.00[AMR][1000 genomes] |
| rs7017814 | 1.00[AMR][1000 genomes] |
| rs73293419 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73293443 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73295385 | 1.00[AMR][1000 genomes] |
| rs7840961 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019518 | chr8:106923469-106959075 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv515580 | chr8:106925995-106956427 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3324625 | chr8:106926825-106951186 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
