Variant report

Variant	rs6995406
Chromosome Location	chr8:19762054-19762055
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10092137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092531	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092538	1.00[EUR][1000 genomes]
rs10099404	1.00[EUR][1000 genomes]
rs10102021	1.00[EUR][1000 genomes]
rs10102032	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10102045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10102876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107119	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111437	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1031045	1.00[EUR][1000 genomes]
rs10503667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992664	1.00[EUR][1000 genomes]
rs11997573	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470186	1.00[EUR][1000 genomes]
rs17091738	1.00[EUR][1000 genomes]
rs17091742	1.00[EUR][1000 genomes]
rs17482338	1.00[EUR][1000 genomes]
rs1800590	1.00[EUR][1000 genomes]
rs1801177	1.00[EUR][1000 genomes]
rs2410615	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28371439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28445964	1.00[EUR][1000 genomes]
rs28522139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28568947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28575919	1.00[EUR][1000 genomes]
rs28582042	1.00[EUR][1000 genomes]
rs28615996	1.00[EUR][1000 genomes]
rs28645722	1.00[EUR][1000 genomes]
rs28689946	1.00[EUR][1000 genomes]
rs28786747	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35469180	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3854905	1.00[EUR][1000 genomes]
rs3900537	1.00[EUR][1000 genomes]
rs3951339	1.00[EUR][1000 genomes]
rs4368997	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56043715	1.00[EUR][1000 genomes]
rs59811201	1.00[EUR][1000 genomes]
rs60633545	1.00[EUR][1000 genomes]
rs60901125	1.00[EUR][1000 genomes]
rs6586879	1.00[EUR][1000 genomes]
rs6984990	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996383	1.00[EUR][1000 genomes]
rs6997330	1.00[EUR][1000 genomes]
rs6998260	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999612	1.00[EUR][1000 genomes]
rs7000460	1.00[EUR][1000 genomes]
rs7008626	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7009128	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7011846	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7016529	1.00[EUR][1000 genomes]
rs73667455	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667459	1.00[EUR][1000 genomes]
rs73667461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667465	1.00[EUR][1000 genomes]
rs73667468	1.00[EUR][1000 genomes]
rs73667469	1.00[EUR][1000 genomes]
rs73667470	0.91[EUR][1000 genomes]
rs7818864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7835874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840666	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840815	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19754800-19762600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:19761800-19763600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:19761800-19764400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:19762000-19762400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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