Variant report

Variant	rs73667463
Chromosome Location	chr8:19794409-19794410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr8:19794387-19794782	Hela-S3	cervix:	n/a	n/a
2	SIN3A	chr8:19794385-19794767	H1-hESC	embryonic stem cell:	n/a	chr8:19794694-19794707
3	MAX	chr8:19794298-19794842	ECC-1	luminal epithelium:	n/a	n/a
4	MAX	chr8:19794234-19794878	H1-hESC	embryonic stem cell:	n/a	n/a
5	EP300	chr8:19794392-19794768	K562	blood:	n/a	chr8:19794730-19794744 chr8:19794684-19794700
6	MAX	chr8:19794338-19794900	HCT-116	colon:	n/a	n/a
7	USF1	chr8:19794364-19794889	HCT-116	colon:	n/a	n/a
8	USF1	chr8:19794304-19794871	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAX	chr8:19794315-19794786	H1-hESC	embryonic stem cell:	n/a	n/a
10	MAX	chr8:19794371-19794809	H1-hESC	embryonic stem cell:	n/a	n/a
11	MXI1	chr8:19794333-19794754	Hela-S3	cervix:	n/a	n/a
12	MAX	chr8:19794383-19794808	K562	blood:	n/a	n/a
13	USF1	chr8:19794393-19794717	H1-hESC	embryonic stem cell:	n/a	n/a
14	SETDB1	chr8:19794353-19794794	U2OS	brain:	n/a	n/a
15	POLR2A	chr8:19794079-19795260	K562	blood:	n/a	n/a
16	E2F6	chr8:19794152-19794962	H1-hESC	embryonic stem cell:	n/a	chr8:19794652-19794661
17	MAX	chr8:19794389-19794801	ECC-1	luminal epithelium:	n/a	n/a
18	MAX	chr8:19794348-19794821	K562	blood:	n/a	n/a
19	E2F6	chr8:19794247-19794866	H1-hESC	embryonic stem cell:	n/a	chr8:19794652-19794661
20	USF1	chr8:19794372-19794778	ECC-1	luminal epithelium:	n/a	n/a
21	USF1	chr8:19794379-19794775	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19793876..19796137-chr8:19796466..19799568,3	K562	blood:

Variant related genes	Relation type
LPL	TF binding region
ENSG00000175445	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10092137	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092538	1.00[EUR][1000 genomes]
rs10099404	1.00[EUR][1000 genomes]
rs10102021	1.00[EUR][1000 genomes]
rs10102032	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10102045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10102876	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1031045	1.00[EUR][1000 genomes]
rs10503667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992664	1.00[EUR][1000 genomes]
rs11997573	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470186	1.00[EUR][1000 genomes]
rs17091738	1.00[EUR][1000 genomes]
rs17091742	1.00[EUR][1000 genomes]
rs17482338	1.00[EUR][1000 genomes]
rs1800590	1.00[EUR][1000 genomes]
rs1801177	1.00[EUR][1000 genomes]
rs2410615	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28371439	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28445964	1.00[EUR][1000 genomes]
rs28522139	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28568947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28575919	1.00[EUR][1000 genomes]
rs28582042	1.00[EUR][1000 genomes]
rs28615996	1.00[EUR][1000 genomes]
rs28645722	1.00[EUR][1000 genomes]
rs28689946	1.00[EUR][1000 genomes]
rs28786747	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35469180	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3854905	1.00[EUR][1000 genomes]
rs3900537	1.00[EUR][1000 genomes]
rs3951339	1.00[EUR][1000 genomes]
rs4368997	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56043715	1.00[EUR][1000 genomes]
rs59811201	1.00[EUR][1000 genomes]
rs60633545	1.00[EUR][1000 genomes]
rs60901125	1.00[EUR][1000 genomes]
rs6586879	1.00[EUR][1000 genomes]
rs6984990	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6995406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6996383	1.00[EUR][1000 genomes]
rs6997330	1.00[EUR][1000 genomes]
rs6998260	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6999612	1.00[EUR][1000 genomes]
rs7000460	1.00[EUR][1000 genomes]
rs7008626	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7009128	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7011846	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7016529	1.00[EUR][1000 genomes]
rs73667455	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667459	1.00[EUR][1000 genomes]
rs73667461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667462	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667465	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73667468	1.00[EUR][1000 genomes]
rs73667469	1.00[EUR][1000 genomes]
rs73667470	0.91[EUR][1000 genomes]
rs7818864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7835874	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840815	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7840959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19794000-19796000	Enhancers	Fetal Heart	heart
2	chr8:19794200-19794600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr8:19794200-19794600	Enhancers	Stomach Mucosa	stomach
4	chr8:19794200-19794800	Enhancers	Fetal Brain Male	brain
5	chr8:19794200-19795000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
6	chr8:19794200-19795000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr8:19794200-19795600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:19794200-19795600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr8:19794200-19795800	Enhancers	Fetal Lung	lung
10	chr8:19794200-19796200	Enhancers	Adipose Nuclei	Adipose
11	chr8:19794400-19794600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
12	chr8:19794400-19794600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
13	chr8:19794400-19794600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
14	chr8:19794400-19794600	Enhancers	Pancreas	Pancrea
15	chr8:19794400-19794600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr8:19794400-19794600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr8:19794400-19794600	Enhancers	Hela-S3	cervix
18	chr8:19794400-19794600	Enhancers	K562	blood
19	chr8:19794400-19794800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:19794400-19794800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
21	chr8:19794400-19794800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:19794400-19794800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr8:19794400-19794800	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links