Variant report

Variant	rs7011846
Chromosome Location	chr8:19785656-19785657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10092137	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10092531	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10102032	0.83[AFR][1000 genomes]
rs10102045	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10102876	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10107119	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10111437	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10503667	0.85[AMR][1000 genomes]
rs11997573	0.85[AMR][1000 genomes]
rs2410615	0.85[AMR][1000 genomes]
rs28371439	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28522139	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28568947	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28786747	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6984990	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6995406	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6998260	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7008626	0.85[AMR][1000 genomes]
rs7009128	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73667455	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73667461	0.85[AMR][1000 genomes]
rs73667462	0.85[AMR][1000 genomes]
rs73667463	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7818864	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7835874	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7840666	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7840959	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19782800-19786800	Weak transcription	Fetal Heart	heart
2	chr8:19785000-19786600	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr8:19785200-19786600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:19785400-19786200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr8:19785400-19786400	Enhancers	Adipose Nuclei	Adipose
6	chr8:19785600-19786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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