Variant report

Variant	rs6996139
Chromosome Location	chr8:130556071-130556072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130549375..130552459-chr8:130554231..130559493,6	K562	blood:
2	chr8:130552925..130555478-chr8:130555641..130558364,2	K562	blood:
3	chr8:130555128..130557292-chr8:130562897..130565321,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10101476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10106330	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11774511	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11782225	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11786408	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12545590	0.82[AFR][1000 genomes]
rs12545943	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675978	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1961510	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55977190	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470735	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470738	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67184710	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67751243	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6985031	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000021	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7011623	0.90[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7016061	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7814625	0.84[EUR][1000 genomes]
rs7831581	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835768	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7839288	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7839408	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130551600-130556800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:130551800-130556800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr8:130551800-130557800	Weak transcription	Thymus	Thymus
4	chr8:130551800-130558200	Weak transcription	Fetal Thymus	thymus
5	chr8:130554200-130558800	Genic enhancers	Dnd41	blood
6	chr8:130555200-130560600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:130555400-130561600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:130555600-130556400	Weak transcription	GM12878-XiMat	blood
9	chr8:130555600-130557800	Strong transcription	K562	blood

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