Variant report

Variant	rs7003820
Chromosome Location	chr8:90325029-90325030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10098624	0.88[ASN][1000 genomes]
rs11984959	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11986115	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11987283	1.00[ASN][1000 genomes]
rs11988494	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11989634	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11992722	1.00[ASN][1000 genomes]
rs11994190	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13281027	1.00[ASN][1000 genomes]
rs34269707	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56887736	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57488028	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6994231	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73295673	0.88[ASN][1000 genomes]
rs73295677	0.88[ASN][1000 genomes]
rs73295679	0.88[ASN][1000 genomes]
rs73295689	1.00[ASN][1000 genomes]
rs73295692	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73295702	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73297804	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73297807	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73297813	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73299833	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73299837	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73299847	1.00[ASN][1000 genomes]
rs73299850	1.00[ASN][1000 genomes]
rs73299852	1.00[ASN][1000 genomes]
rs73299855	1.00[ASN][1000 genomes]
rs7812395	1.00[ASN][1000 genomes]
rs7831000	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7835697	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7846040	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv891178	chr8:90289326-90337010	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891179	chr8:90307652-90335826	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv2757280	chr8:90321647-90338278	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv2759627	chr8:90321647-90338278	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90321600-90325200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr8:90323400-90326600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:90323400-90327600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:90323800-90325400	Weak transcription	A549	lung
5	chr8:90324600-90327200	Enhancers	HUVEC	blood vessel
6	chr8:90324800-90325200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:90324800-90325200	Enhancers	NH-A	brain
8	chr8:90324800-90325400	Enhancers	Fetal Kidney	kidney
9	chr8:90324800-90325800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:90324800-90326600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr8:90324800-90326600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:90324800-90326800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:90324800-90327000	Enhancers	NHEK	skin
14	chr8:90325000-90325400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:90325000-90326000	Enhancers	HMEC	breast
16	chr8:90325000-90326400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:90325000-90326600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links