Variant report

Variant	rs73295677
Chromosome Location	chr8:90276745-90276746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10086675	0.93[AFR][1000 genomes]
rs10093903	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10098624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10102110	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10103063	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10109917	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10111206	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10955972	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11984959	0.88[ASN][1000 genomes]
rs11986115	0.88[ASN][1000 genomes]
rs11986218	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11987283	0.88[ASN][1000 genomes]
rs11988494	0.88[ASN][1000 genomes]
rs11989634	0.88[ASN][1000 genomes]
rs11992722	0.88[ASN][1000 genomes]
rs11994190	0.88[ASN][1000 genomes]
rs12114192	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13281027	0.88[ASN][1000 genomes]
rs13438995	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28516901	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28810389	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs34269707	0.83[ASN][1000 genomes]
rs56887736	0.88[ASN][1000 genomes]
rs57488028	0.88[ASN][1000 genomes]
rs6994231	0.88[ASN][1000 genomes]
rs7003820	0.88[ASN][1000 genomes]
rs73292241	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292247	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292254	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292261	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292264	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292265	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292278	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292279	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73292280	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73294145	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73295673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73295679	1.00[ASN][1000 genomes]
rs73295689	0.88[ASN][1000 genomes]
rs73295692	0.88[ASN][1000 genomes]
rs73295702	0.88[ASN][1000 genomes]
rs73297804	0.88[ASN][1000 genomes]
rs73297807	0.88[ASN][1000 genomes]
rs73297813	0.88[ASN][1000 genomes]
rs73299833	0.88[ASN][1000 genomes]
rs73299837	0.83[ASN][1000 genomes]
rs73299847	0.88[ASN][1000 genomes]
rs73299850	0.88[ASN][1000 genomes]
rs73299852	0.88[ASN][1000 genomes]
rs73299855	0.88[ASN][1000 genomes]
rs7812395	0.88[ASN][1000 genomes]
rs7831000	0.88[ASN][1000 genomes]
rs7835697	0.88[ASN][1000 genomes]
rs7846040	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90267200-90281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:90275200-90279400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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