Variant report

Variant	rs73292241
Chromosome Location	chr8:90250465-90250466
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10086675	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093903	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098624	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10102110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109917	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986218	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991364	1.00[EUR][1000 genomes]
rs11996831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114437	1.00[EUR][1000 genomes]
rs13438995	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28810389	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28833856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318255	1.00[EUR][1000 genomes]
rs318257	1.00[EUR][1000 genomes]
rs318263	1.00[EUR][1000 genomes]
rs318264	1.00[EUR][1000 genomes]
rs73290155	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73290158	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73292247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292280	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73294145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73294147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73294170	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295673	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73295677	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73696414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833277	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1034759	chr8:90152834-90252502	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90248600-90259600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:90249200-90251200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:90249200-90254000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr8:90249800-90251000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr8:90249800-90253600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr8:90250000-90253600	Enhancers	Primary T cells from cord blood	blood
7	chr8:90250000-90259600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr8:90250200-90250600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
9	chr8:90250200-90250600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
10	chr8:90250200-90253600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr8:90250400-90250600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell

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