Variant report

Variant	rs12114437
Chromosome Location	chr8:90212981-90212982
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10086675	1.00[EUR][1000 genomes]
rs10093903	1.00[EUR][1000 genomes]
rs10102110	1.00[EUR][1000 genomes]
rs10103063	1.00[EUR][1000 genomes]
rs10104601	1.00[EUR][1000 genomes]
rs10109917	1.00[EUR][1000 genomes]
rs10111206	1.00[EUR][1000 genomes]
rs10955972	1.00[EUR][1000 genomes]
rs11986218	1.00[EUR][1000 genomes]
rs11991364	1.00[EUR][1000 genomes]
rs11996831	1.00[EUR][1000 genomes]
rs12114192	1.00[EUR][1000 genomes]
rs12114193	1.00[EUR][1000 genomes]
rs13438995	1.00[EUR][1000 genomes]
rs28516901	1.00[EUR][1000 genomes]
rs28687906	1.00[EUR][1000 genomes]
rs28810389	1.00[EUR][1000 genomes]
rs28833856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs318255	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs318257	1.00[EUR][1000 genomes]
rs318263	1.00[EUR][1000 genomes]
rs318264	1.00[EUR][1000 genomes]
rs6469883	0.83[ASN][1000 genomes]
rs73290155	1.00[EUR][1000 genomes]
rs73290158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73292241	1.00[EUR][1000 genomes]
rs73292247	1.00[EUR][1000 genomes]
rs73292254	1.00[EUR][1000 genomes]
rs73292261	1.00[EUR][1000 genomes]
rs73292264	1.00[EUR][1000 genomes]
rs73292265	1.00[EUR][1000 genomes]
rs73292278	1.00[EUR][1000 genomes]
rs73292279	1.00[EUR][1000 genomes]
rs73292280	1.00[EUR][1000 genomes]
rs73294145	1.00[EUR][1000 genomes]
rs73294147	1.00[EUR][1000 genomes]
rs73294170	1.00[EUR][1000 genomes]
rs73295660	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73295669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73696414	1.00[EUR][1000 genomes]
rs73696416	1.00[EUR][1000 genomes]
rs7833277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1034759	chr8:90152834-90252502	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv821658	chr8:90199535-90245081	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90202800-90213400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:90212200-90213800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:90212200-90213800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:90212200-90214200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:90212400-90213400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:90212400-90213600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:90212600-90213000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:90212600-90213600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:90212600-90213600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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