Variant report

Variant	rs28833856
Chromosome Location	chr8:90267674-90267675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90266351..90268017-chr8:90270603..90272276,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10086675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10093903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103063	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104601	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10109917	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991364	1.00[EUR][1000 genomes]
rs11996831	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12114437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13438995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28516901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28687906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28810389	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318255	1.00[EUR][1000 genomes]
rs318257	1.00[EUR][1000 genomes]
rs318263	1.00[EUR][1000 genomes]
rs318264	1.00[EUR][1000 genomes]
rs73290155	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73290158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73292241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292254	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292261	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292265	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292278	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292279	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73292280	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73294145	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73294147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73294170	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295660	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295669	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73295679	0.90[AFR][1000 genomes]
rs73295689	0.82[AFR][1000 genomes]
rs73696414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73696416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7833277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90266200-90269600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:90266200-90272000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:90266400-90272000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:90266800-90268400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:90267200-90281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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