Variant report

Variant	rs7007512
Chromosome Location	chr8:122438029-122438030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122437593..122440678-chr8:122446025..122448409,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10956031	0.89[ASN][1000 genomes]
rs10956036	0.91[ASN][1000 genomes]
rs10956037	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs13258852	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13273394	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13275393	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892972	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16895184	0.88[ASN][1000 genomes]
rs16895194	0.87[ASN][1000 genomes]
rs16895321	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1906215	0.91[ASN][1000 genomes]
rs2891940	0.91[ASN][1000 genomes]
rs34247899	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34352931	0.90[ASN][1000 genomes]
rs35089934	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35131741	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs35426682	0.89[ASN][1000 genomes]
rs4363200	0.93[ASN][1000 genomes]
rs55767339	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs66510431	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67504931	0.88[ASN][1000 genomes]
rs67804564	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6985507	0.89[ASN][1000 genomes]
rs7001692	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7013228	0.91[ASN][1000 genomes]
rs7813908	0.88[ASN][1000 genomes]
rs7831540	0.91[ASN][1000 genomes]
rs7833556	0.92[ASN][1000 genomes]
rs7833779	0.91[ASN][1000 genomes]
rs7834923	0.91[ASN][1000 genomes]
rs9792293	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1018781	chr8:122403995-122438697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1029597	chr8:122403995-122440174	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv465793	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv612132	chr8:122405097-122452320	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1847136	chr8:122411349-122445322	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891427	chr8:122411349-122472297	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv525416	chr8:122425336-122445322	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv527877	chr8:122426082-122472297	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122436400-122439200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:122437000-122440000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:122437400-122439400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:122437600-122440200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr8:122438000-122439600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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