Variant report

Variant	rs9792293
Chromosome Location	chr8:122395904-122395905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10956031	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10956036	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956037	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13258852	0.92[ASN][1000 genomes]
rs13273394	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13275393	0.91[ASN][1000 genomes]
rs16892972	0.96[ASN][1000 genomes]
rs16895184	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16895194	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16895321	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1906215	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2891940	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34247899	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34352931	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35089934	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35131741	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35426682	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4363200	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55767339	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66510431	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67504931	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6985507	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001692	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7007512	0.91[ASN][1000 genomes]
rs7013228	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7813908	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7831540	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7833556	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7833779	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7834923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465792	chr8:122329373-122398867	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv612131	chr8:122329373-122398867	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv831445	chr8:122336877-122509300	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1808330	chr8:122385614-122415509	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2755780	chr8:122393819-122426819	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1027842	chr8:122394235-122427343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122394200-122396400	Weak transcription	NHDF-Ad	bronchial
2	chr8:122394200-122405200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:122394600-122396400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:122395000-122396600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:122395000-122397800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:122395400-122397200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:122395400-122400400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:122395600-122396000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:122395600-122396200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:122395600-122396600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:122395800-122396000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links