Variant report

Variant	rs7007780
Chromosome Location	chr8:49729170-49729171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49728902..49731441-chr8:49740004..49742138,2	MCF-7	breast:
2	chr8:49726188..49729187-chr8:49729418..49731051,2	MCF-7	breast:
3	chr8:49728836..49731044-chr8:49832275..49835138,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10103815	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10108018	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1023769	0.94[JPT][hapmap]
rs11779318	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11783791	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28620290	0.97[ASN][1000 genomes]
rs4873087	0.88[ASN][1000 genomes]
rs4873290	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6472078	0.97[ASN][1000 genomes]
rs6989076	0.97[ASN][1000 genomes]
rs7831003	0.96[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49723200-49730800	Weak transcription	Spleen	Spleen
2	chr8:49724400-49730400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:49726400-49729800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:49726600-49729600	Enhancers	Adipose Nuclei	Adipose
5	chr8:49726800-49730600	Weak transcription	Osteobl	bone
6	chr8:49726800-49731200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:49727000-49730000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:49727000-49730000	Enhancers	Pancreas	Pancrea
9	chr8:49727200-49729600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:49727400-49730600	Weak transcription	NH-A	brain
11	chr8:49727600-49732600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr8:49727800-49730600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:49727800-49730800	Weak transcription	Esophagus	oesophagus
14	chr8:49728000-49729200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:49728000-49730600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:49728000-49730600	Weak transcription	Hela-S3	cervix
17	chr8:49728000-49731000	Weak transcription	Placenta	Placenta
18	chr8:49728000-49732400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:49728200-49734000	Enhancers	Fetal Muscle Leg	muscle
20	chr8:49728200-49734400	Enhancers	Fetal Muscle Trunk	muscle
21	chr8:49728600-49729400	Enhancers	Left Ventricle	heart
22	chr8:49728600-49729600	Bivalent Enhancer	Fetal Stomach	stomach
23	chr8:49728600-49729600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:49728600-49729600	Enhancers	HSMMtube	muscle
25	chr8:49728600-49729800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:49728600-49731200	Enhancers	Fetal Lung	lung
27	chr8:49728800-49729200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:49728800-49729600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:49728800-49729600	Enhancers	Duodenum Mucosa	Duodenum
30	chr8:49728800-49729600	Enhancers	Psoas Muscle	Psoas
31	chr8:49728800-49729800	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr8:49728800-49730600	Weak transcription	NHLF	lung
33	chr8:49728800-49731400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:49729000-49729200	Enhancers	HSMM	muscle
35	chr8:49729000-49730600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:49729000-49730800	Weak transcription	Small Intestine	intestine

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