Variant report

Variant	rs4873087
Chromosome Location	chr8:49718692-49718693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10097910	0.83[CEU][hapmap]
rs10103815	0.88[ASN][1000 genomes]
rs10108018	0.88[ASN][1000 genomes]
rs1023769	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs11779318	0.86[ASN][1000 genomes]
rs11783791	0.90[ASN][1000 genomes]
rs2735455	0.83[CEU][hapmap]
rs28620290	0.87[ASN][1000 genomes]
rs4873290	1.00[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs6472078	0.87[ASN][1000 genomes]
rs6989076	0.87[ASN][1000 genomes]
rs7007780	0.94[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs73577407	0.84[AFR][1000 genomes]
rs7831003	0.88[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4873087	EFCAB1	cis	cerebellum	SCAN
rs4873087	EFCAB1	cis	parietal	SCAN
rs4873087	C8orf22	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49718400-49723400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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