Variant report

Variant	rs701332
Chromosome Location	chr7:86277634-86277635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10227921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10257201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11762187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12704282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13242038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1527762	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs274632	1.00[CHB][hapmap]
rs274635	1.00[CHB][hapmap]
rs6950735	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs701331	0.86[AMR][1000 genomes]
rs7806940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs802429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs802458	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86272600-86277800	Active TSS	Brain Cingulate Gyrus	brain
2	chr7:86272600-86278000	Active TSS	Brain Anterior Caudate	brain
3	chr7:86272600-86278000	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr7:86274600-86283200	Weak transcription	Right Atrium	heart
5	chr7:86275400-86283200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:86276000-86278400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:86276000-86278400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:86276000-86278400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:86276000-86278800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:86276400-86278400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:86276600-86278400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:86276600-86278400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:86276600-86278400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:86276800-86277800	Active TSS	Brain Substantia Nigra	brain
15	chr7:86276800-86278400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:86276800-86278400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr7:86277000-86277800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr7:86277000-86280000	Weak transcription	Fetal Brain Male	brain
19	chr7:86277200-86280000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:86277200-86280000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr7:86277400-86278000	Flanking Active TSS	Brain Angular Gyrus	brain
22	chr7:86277400-86279000	Enhancers	Brain Hippocampus Middle	brain
23	chr7:86277600-86277800	Flanking Active TSS	Fetal Brain Female	brain

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