Variant report

Variant	rs802429
Chromosome Location	chr7:86283126-86283127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10227921	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10257201	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11762187	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12704282	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13242038	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1527762	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2299218	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6950735	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs701331	0.86[AMR][1000 genomes]
rs701332	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7806940	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs802432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs802458	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86274600-86283200	Weak transcription	Right Atrium	heart
2	chr7:86275400-86283200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:86278400-86283200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:86280400-86283200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:86280600-86283200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:86280600-86283200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:86280600-86283400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr7:86280600-86289400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:86280800-86283200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:86280800-86283200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:86280800-86283200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:86281000-86288800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:86281400-86283200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:86282000-86283200	Enhancers	Brain Hippocampus Middle	brain
15	chr7:86282400-86283200	Enhancers	Brain Angular Gyrus	brain
16	chr7:86282400-86283200	Enhancers	Brain Anterior Caudate	brain
17	chr7:86282400-86283600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:86282600-86283800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:86282600-86284200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr7:86282800-86283600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr7:86282800-86283800	Active TSS	Brain Substantia Nigra	brain
22	chr7:86283000-86283200	Enhancers	Brain Cingulate Gyrus	brain
23	chr7:86283000-86283800	Enhancers	H9 Cell Line	embryonic stem cell

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