Variant report

Variant	rs802458
Chromosome Location	chr7:86252320-86252321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10227921	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10257201	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11762187	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12704282	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13242038	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs13244678	0.88[EUR][1000 genomes]
rs1527762	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2299218	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap]
rs274632	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs274635	1.00[CHB][hapmap]
rs701331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs701332	0.86[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes]
rs7806940	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs802429	0.86[AMR][1000 genomes]
rs802432	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1017470	chr7:86221308-86263909	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv526622	chr7:86222259-86260816	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86251800-86252600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:86252200-86252600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:86252200-86252600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:86252200-86253000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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