Variant report

Variant	rs7017357
Chromosome Location	chr8:110658527-110658528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:110653568..110656505-chr8:110658430..110660040,2	MCF-7	breast:
2	chr8:110550248..110554482-chr8:110655662..110659384,5	MCF-7	breast:
3	chr8:110563214..110565678-chr8:110658219..110659984,2	K562	blood:
4	chr8:110344753..110346999-chr8:110656055..110658588,2	MCF-7	breast:
5	chr8:110656684..110658658-chr8:110660535..110663260,4	MCF-7	breast:
6	chr8:110656100..110658662-chr8:110702004..110704480,2	MCF-7	breast:
7	chr8:110550854..110555574-chr8:110655521..110658971,8	MCF-7	breast:
8	chr8:110587269..110587781-chr8:110658115..110658651,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000120526	Chromatin interaction
ENSG00000120533	Chromatin interaction
ENSG00000248050	Chromatin interaction
ENSG00000147654	Chromatin interaction
ENSG00000147642	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10092211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879889	1.00[ASN][1000 genomes]
rs16879903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879906	1.00[ASN][1000 genomes]
rs28404625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28465493	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28636990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28726128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313130	1.00[ASN][1000 genomes]
rs4506181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56384256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56838167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57167766	1.00[ASN][1000 genomes]
rs57285880	1.00[ASN][1000 genomes]
rs58404081	1.00[ASN][1000 genomes]
rs58910462	1.00[ASN][1000 genomes]
rs59161508	1.00[ASN][1000 genomes]
rs59892422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59981669	0.81[ASN][1000 genomes]
rs60841208	1.00[ASN][1000 genomes]
rs61437630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61702273	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469277	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6987830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011702	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73321006	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321029	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817360	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817773	1.00[ASN][1000 genomes]
rs7824472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7825942	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7841022	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842227	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843208	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9297431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110654800-110661200	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr8:110655200-110661200	Active TSS	Brain Angular Gyrus	brain
3	chr8:110655800-110659400	Active TSS	Brain Hippocampus Middle	brain
4	chr8:110657400-110659000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr8:110657800-110658600	Active TSS	Fetal Brain Female	brain
6	chr8:110658000-110659000	Enhancers	Duodenum Mucosa	Duodenum
7	chr8:110658000-110659200	Weak transcription	K562	blood
8	chr8:110658000-110659400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:110658000-110659400	Weak transcription	NHEK	skin
10	chr8:110658000-110659600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:110658000-110659600	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:110658000-110660200	Enhancers	Fetal Brain Male	brain
13	chr8:110658200-110658600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:110658200-110659000	Weak transcription	Brain Anterior Caudate	brain
15	chr8:110658200-110659000	Enhancers	NHDF-Ad	bronchial
16	chr8:110658200-110659200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:110658200-110659200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr8:110658200-110659400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:110658200-110659600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr8:110658200-110660000	Weak transcription	Brain Germinal Matrix	brain
21	chr8:110658200-110660000	Weak transcription	Esophagus	oesophagus
22	chr8:110658200-110660400	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr8:110658400-110658600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:110658400-110658600	Enhancers	Stomach Smooth Muscle	stomach
25	chr8:110658400-110659400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:110658400-110660000	Enhancers	HepG2	liver
27	chr8:110658400-110661200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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