Variant report

Variant	rs57167766
Chromosome Location	chr8:110670408-110670409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:110669997..110672035-chr8:110674199..110676102,2	MCF-7	breast:
2	chr8:110552007..110554133-chr8:110670328..110672322,2	K562	blood:
3	chr8:110350930..110353180-chr8:110667462..110670458,2	MCF-7	breast:
4	chr8:110664832..110666386-chr8:110668699..110671644,3	K562	blood:

Variant related genes	Relation type
ENSG00000120533	Chromatin interaction
ENSG00000147654	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10086058	1.00[EUR][1000 genomes]
rs10091536	1.00[EUR][1000 genomes]
rs10092211	1.00[ASN][1000 genomes]
rs10097751	1.00[EUR][1000 genomes]
rs10098728	1.00[ASN][1000 genomes]
rs10101288	1.00[EUR][1000 genomes]
rs10106169	1.00[ASN][1000 genomes]
rs10106568	1.00[ASN][1000 genomes]
rs10106809	1.00[ASN][1000 genomes]
rs11988264	1.00[ASN][1000 genomes]
rs16879862	1.00[ASN][1000 genomes]
rs16879869	1.00[ASN][1000 genomes]
rs16879889	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879903	1.00[ASN][1000 genomes]
rs16879906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404625	0.97[ASN][1000 genomes]
rs28423669	1.00[EUR][1000 genomes]
rs28465493	0.97[ASN][1000 genomes]
rs28571606	1.00[EUR][1000 genomes]
rs28583803	1.00[EUR][1000 genomes]
rs28593097	1.00[EUR][1000 genomes]
rs28610171	1.00[EUR][1000 genomes]
rs28623195	1.00[EUR][1000 genomes]
rs28636990	1.00[ASN][1000 genomes]
rs28726128	1.00[ASN][1000 genomes]
rs4313130	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506181	1.00[ASN][1000 genomes]
rs56384256	1.00[ASN][1000 genomes]
rs56838167	0.81[ASN][1000 genomes]
rs57285880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57962861	1.00[EUR][1000 genomes]
rs58404081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58910462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59161508	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59892422	1.00[ASN][1000 genomes]
rs59981669	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60387056	1.00[EUR][1000 genomes]
rs60841208	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61437630	1.00[ASN][1000 genomes]
rs61702273	1.00[ASN][1000 genomes]
rs6469277	0.81[ASN][1000 genomes]
rs6987830	1.00[ASN][1000 genomes]
rs7011702	0.86[ASN][1000 genomes]
rs7017357	1.00[ASN][1000 genomes]
rs73319188	1.00[EUR][1000 genomes]
rs73319190	1.00[EUR][1000 genomes]
rs73321006	1.00[ASN][1000 genomes]
rs73321029	1.00[ASN][1000 genomes]
rs7817360	1.00[ASN][1000 genomes]
rs7817773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824472	1.00[ASN][1000 genomes]
rs7825511	1.00[EUR][1000 genomes]
rs7825600	1.00[EUR][1000 genomes]
rs7825601	1.00[EUR][1000 genomes]
rs7825942	1.00[ASN][1000 genomes]
rs7841022	1.00[ASN][1000 genomes]
rs7842227	1.00[ASN][1000 genomes]
rs7843208	0.81[ASN][1000 genomes]
rs9297431	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110668200-110670800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:110669200-110672000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:110669400-110670800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:110670400-110676800	Weak transcription	Fetal Brain Male	brain

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