Variant report

Variant	rs16879906
Chromosome Location	chr8:110676353-110676354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10086058	1.00[EUR][1000 genomes]
rs10091536	1.00[EUR][1000 genomes]
rs10092211	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10097751	1.00[EUR][1000 genomes]
rs10098728	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10101288	1.00[EUR][1000 genomes]
rs10106169	1.00[ASN][1000 genomes]
rs10106568	1.00[ASN][1000 genomes]
rs10106809	1.00[ASN][1000 genomes]
rs11988264	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16879862	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16879869	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16879889	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879903	1.00[ASN][1000 genomes]
rs28404625	0.97[ASN][1000 genomes]
rs28423669	1.00[EUR][1000 genomes]
rs28465493	0.97[ASN][1000 genomes]
rs28571606	1.00[EUR][1000 genomes]
rs28583803	1.00[EUR][1000 genomes]
rs28593097	1.00[EUR][1000 genomes]
rs28610171	1.00[EUR][1000 genomes]
rs28623195	1.00[EUR][1000 genomes]
rs28636990	1.00[ASN][1000 genomes]
rs28726128	1.00[ASN][1000 genomes]
rs4313130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4506181	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs56384256	1.00[ASN][1000 genomes]
rs56838167	0.81[ASN][1000 genomes]
rs57167766	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57285880	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57962861	1.00[EUR][1000 genomes]
rs58404081	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58910462	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59161508	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59892422	1.00[ASN][1000 genomes]
rs59981669	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60387056	1.00[EUR][1000 genomes]
rs60841208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61437630	1.00[ASN][1000 genomes]
rs61702273	1.00[ASN][1000 genomes]
rs6469277	0.81[ASN][1000 genomes]
rs6987830	1.00[ASN][1000 genomes]
rs7011702	0.86[ASN][1000 genomes]
rs7017357	1.00[ASN][1000 genomes]
rs73319188	1.00[EUR][1000 genomes]
rs73319190	1.00[EUR][1000 genomes]
rs73321006	1.00[ASN][1000 genomes]
rs73321029	1.00[ASN][1000 genomes]
rs7817360	1.00[ASN][1000 genomes]
rs7817773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824472	1.00[ASN][1000 genomes]
rs7825511	1.00[EUR][1000 genomes]
rs7825600	1.00[EUR][1000 genomes]
rs7825601	1.00[EUR][1000 genomes]
rs7825942	1.00[ASN][1000 genomes]
rs7841022	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7842227	1.00[ASN][1000 genomes]
rs7843208	0.81[ASN][1000 genomes]
rs9297431	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849702	chr8:110594148-110683804	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16879906	SYBU	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110670400-110676800	Weak transcription	Fetal Brain Male	brain
2	chr8:110670800-110678200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:110672000-110680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:110676200-110676400	Weak transcription	Stomach Smooth Muscle	stomach

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