Variant report
| Variant | rs7020963 |
|---|---|
| Chromosome Location | chr9:116613076-116613077 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:116612441..116615923-chr9:116636508..116640931,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000157657 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10817523 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10817527 | 1.00[CEU][hapmap] |
| rs10981940 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10981961 | 1.00[CEU][hapmap] |
| rs10981969 | 1.00[CEU][hapmap] |
| rs10981972 | 0.89[AFR][1000 genomes] |
| rs10981975 | 1.00[CEU][hapmap] |
| rs10981982 | 0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12237042 | 1.00[CEU][hapmap] |
| rs12551482 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2418253 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs35929232 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56730168 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs57848797 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs60668360 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs61533724 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7038455 | 1.00[CEU][hapmap] |
| rs7852347 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430093 | chr9:116330446-117325446 | Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 165 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
