Variant report

Variant	rs10981940
Chromosome Location	chr9:116573081-116573082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10817521	0.82[MEX][hapmap]
rs10817523	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10817527	1.00[CEU][hapmap]
rs10981961	1.00[CEU][hapmap]
rs10981969	1.00[CEU][hapmap]
rs10981972	0.82[AFR][1000 genomes]
rs10981975	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10981982	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12237042	1.00[CEU][hapmap]
rs12551482	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16910261	0.82[MEX][hapmap]
rs2418253	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35929232	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56730168	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57848797	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60668360	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61533724	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7020963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7038455	1.00[CEU][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116570400-116576800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr9:116573000-116573200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links