Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57093138..57095197-chr5:57103186..57104932,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11949779	0.80[CEU][hapmap]
rs2408854	0.86[MEX][hapmap];0.85[TSI][hapmap]
rs4235476	0.85[TSI][hapmap]
rs4285175	0.80[CEU][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs4317282	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4403130	0.85[TSI][hapmap]
rs4458541	0.86[MEX][hapmap];0.85[TSI][hapmap]
rs4700231	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62360103	0.85[AFR][1000 genomes]
rs6865443	0.80[LWK][hapmap];0.94[YRI][hapmap]
rs6896848	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs702699	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs702701	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7724301	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs854035	0.81[AMR][1000 genomes]
rs854036	0.81[AMR][1000 genomes]
rs854042	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs854046	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs854048	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs854049	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs854050	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs854052	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs854053	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57100600-57105000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:57100600-57111600	Weak transcription	HSMM	muscle
3	chr5:57101200-57105000	Weak transcription	NHLF	lung
4	chr5:57101600-57111600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:57102200-57105200	Weak transcription	NH-A	brain
6	chr5:57102400-57107600	Weak transcription	Osteobl	bone
7	chr5:57102400-57108000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:57102400-57108000	Weak transcription	NHDF-Ad	bronchial
9	chr5:57102400-57112000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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