Variant report

Variant	rs7724301
Chromosome Location	chr5:57114080-57114081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4285175	0.80[CEU][hapmap]
rs4317282	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4700231	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6896848	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs702699	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs702700	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs702701	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854035	0.81[AMR][1000 genomes]
rs854036	0.81[AMR][1000 genomes]
rs854042	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854046	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854048	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854049	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854050	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854052	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs854053	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57111600-57114200	Enhancers	Muscle Satellite Cultured Cells	--
2	chr5:57111600-57114200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:57111600-57114200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:57111600-57114200	Enhancers	NH-A	brain
5	chr5:57111600-57114200	Enhancers	Osteobl	bone
6	chr5:57111600-57114400	Enhancers	HSMM	muscle
7	chr5:57111600-57114600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:57112000-57114800	Enhancers	HUVEC	blood vessel
9	chr5:57112400-57114200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:57113200-57119600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:57113800-57114200	Enhancers	Fetal Lung	lung
12	chr5:57114000-57118000	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links