Variant report

Variant	rs854049
Chromosome Location	chr5:57105429-57105430
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10072292	1.00[AFR][1000 genomes]
rs1821210	0.82[AFR][1000 genomes]
rs1861059	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2408854	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2568537	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2568549	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4235475	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4235476	0.83[EUR][1000 genomes]
rs4285175	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4317282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4380607	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4403130	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4421067	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4458541	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4513644	0.91[AFR][1000 genomes]
rs4699913	0.82[AFR][1000 genomes]
rs4700231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4700233	0.82[AFR][1000 genomes]
rs62362089	0.82[AFR][1000 genomes]
rs6450442	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6450444	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6896848	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs702699	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs702700	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs702701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71585052	0.80[EUR][1000 genomes]
rs7701200	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7724301	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854024	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs854028	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs854031	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs854033	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs854035	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854036	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854038	0.90[AMR][1000 genomes]
rs854039	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs854042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs854045	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs854046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs854052	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs854053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs868049	0.84[AFR][1000 genomes]
rs897264	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57100600-57111600	Weak transcription	HSMM	muscle
2	chr5:57101600-57111600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:57102400-57107600	Weak transcription	Osteobl	bone
4	chr5:57102400-57108000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:57102400-57108000	Weak transcription	NHDF-Ad	bronchial
6	chr5:57102400-57112000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:57105000-57105600	Enhancers	NHLF	lung
8	chr5:57105200-57107200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links