Variant report

Variant	rs868049
Chromosome Location	chr5:57179673-57179674
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57178085..57180668-chr5:57182148..57183744,2	MCF-7	breast:
2	chr5:57178104..57180518-chr5:57747477..57749354,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10072292	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1821210	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1861059	0.84[AFR][1000 genomes]
rs2408854	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2568537	0.84[AFR][1000 genomes]
rs4235475	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4235476	0.87[EUR][1000 genomes]
rs4285175	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4317282	0.84[AFR][1000 genomes]
rs4380607	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4403130	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4421067	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4458541	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4513644	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4699913	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4700231	0.84[AFR][1000 genomes]
rs4700233	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6450442	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6450444	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6896848	0.84[AFR][1000 genomes]
rs702701	0.84[AFR][1000 genomes]
rs7701200	0.83[EUR][1000 genomes]
rs854024	0.84[AFR][1000 genomes]
rs854028	0.84[AFR][1000 genomes]
rs854031	0.84[AFR][1000 genomes]
rs854033	0.84[AFR][1000 genomes]
rs854035	0.84[AFR][1000 genomes]
rs854036	0.84[AFR][1000 genomes]
rs854045	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs854046	0.84[AFR][1000 genomes]
rs854048	0.84[AFR][1000 genomes]
rs854049	0.84[AFR][1000 genomes]
rs854050	0.84[AFR][1000 genomes]
rs854053	0.84[AFR][1000 genomes]
rs897264	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57175000-57185200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:57176600-57183400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57179000-57180000	Enhancers	Fetal Lung	lung
4	chr5:57179200-57179800	Enhancers	Fetal Stomach	stomach
5	chr5:57179200-57181600	Enhancers	Placenta	Placenta
6	chr5:57179200-57183600	Weak transcription	Fetal Heart	heart
7	chr5:57179400-57180600	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links