Variant report

Variant	rs897264
Chromosome Location	chr5:57181785-57181786
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57180077..57190681-chr5:57752076..57758335,34	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10072292	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1821210	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2408854	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4235475	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4235476	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4285175	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4317282	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4380607	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4403130	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4421067	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4458541	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4513644	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4699913	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4700231	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4700233	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6450442	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6450444	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6896848	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs702699	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs702701	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7701200	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs854035	0.83[AMR][1000 genomes]
rs854036	0.83[AMR][1000 genomes]
rs854038	0.82[AMR][1000 genomes]
rs854042	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs854046	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs854048	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs854049	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs854050	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs854052	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs854053	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs868049	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57175000-57185200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:57176600-57183400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57179200-57183600	Weak transcription	Fetal Heart	heart
4	chr5:57179800-57183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:57179800-57184200	Weak transcription	Fetal Stomach	stomach
6	chr5:57180000-57183800	Weak transcription	Fetal Lung	lung
7	chr5:57180600-57185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:57181400-57183200	Weak transcription	A549	lung
9	chr5:57181400-57184400	Enhancers	Brain Germinal Matrix	brain
10	chr5:57181400-57185200	Weak transcription	NHLF	lung
11	chr5:57181600-57182600	Weak transcription	Placenta	Placenta

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