Variant report

Variant	rs7027794
Chromosome Location	chr9:92755503-92755504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:92753705..92756579-chr9:92759778..92762031,2	MCF-7	breast:
2	chr9:92748557..92752468-chr9:92755294..92758086,3	MCF-7	breast:
3	chr9:92741964..92746302-chr9:92752977..92756296,4	MCF-7	breast:
4	chr9:92736111..92738739-chr9:92755408..92756984,2	MCF-7	breast:
5	chr9:92755082..92756623-chr9:92757434..92759681,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12685019	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12685781	0.93[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34954114	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4744002	0.93[ASN][1000 genomes]
rs4744499	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs662867	0.96[ASN][1000 genomes]
rs9650758	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3402834	chr9:92753532-92758030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92750200-92759800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:92750400-92755600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:92751600-92756000	Weak transcription	HSMMtube	muscle
4	chr9:92751600-92756200	Weak transcription	HSMM	muscle
5	chr9:92751800-92756000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr9:92752200-92757400	Enhancers	Stomach Mucosa	stomach
7	chr9:92752400-92761600	Weak transcription	Aorta	Aorta
8	chr9:92752600-92757400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr9:92752800-92759600	Enhancers	Liver	Liver
10	chr9:92753200-92757200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr9:92753400-92756200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr9:92753600-92757800	Enhancers	Pancreas	Pancrea
13	chr9:92753600-92758000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:92753600-92765400	Enhancers	Fetal Intestine Large	intestine
15	chr9:92754000-92758600	Enhancers	Fetal Heart	heart
16	chr9:92754000-92765400	Enhancers	Fetal Intestine Small	intestine
17	chr9:92754200-92759200	Enhancers	Placenta	Placenta
18	chr9:92754400-92756400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:92754400-92757600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr9:92754400-92758000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:92754400-92758000	Enhancers	Left Ventricle	heart
22	chr9:92754400-92758000	Enhancers	Right Ventricle	heart
23	chr9:92754400-92758200	Enhancers	Lung	lung
24	chr9:92754400-92758200	Enhancers	Ovary	ovary
25	chr9:92754600-92755600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr9:92754600-92756200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr9:92754600-92756400	Enhancers	Gastric	stomach
28	chr9:92754600-92758000	Enhancers	Fetal Muscle Leg	muscle
29	chr9:92754600-92758800	Enhancers	Right Atrium	heart
30	chr9:92754800-92755600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr9:92754800-92756600	Enhancers	HepG2	liver
32	chr9:92754800-92757200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr9:92754800-92757600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr9:92754800-92758600	Enhancers	Adipose Nuclei	Adipose
35	chr9:92755000-92756000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr9:92755000-92756200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:92755000-92756200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:92755000-92756200	Weak transcription	Esophagus	oesophagus
39	chr9:92755000-92756600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:92755000-92757200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr9:92755000-92758400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:92755000-92762000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr9:92755200-92755600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr9:92755200-92756200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:92755200-92757400	Enhancers	Brain Hippocampus Middle	brain
46	chr9:92755200-92757600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:92755200-92757800	Enhancers	Primary B cells from cord blood	blood
48	chr9:92755200-92758200	Enhancers	Duodenum Mucosa	Duodenum
49	chr9:92755200-92758200	Enhancers	Spleen	Spleen
50	chr9:92755400-92755600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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