Variant report

Variant	rs9650758
Chromosome Location	chr9:92770559-92770560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92766437..92768027-chr9:92770302..92772264,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10116454	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs10991740	0.84[CEU][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10991742	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10991751	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10991758	0.81[EUR][1000 genomes]
rs10991799	0.91[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10991819	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs10993742	0.83[EUR][1000 genomes]
rs10993743	0.83[EUR][1000 genomes]
rs12685019	0.85[ASN][1000 genomes]
rs12685781	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13299384	0.81[EUR][1000 genomes]
rs13301471	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs16906087	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16906093	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs34473649	0.81[EUR][1000 genomes]
rs34954114	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4744002	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744025	0.81[EUR][1000 genomes]
rs4744027	0.81[EUR][1000 genomes]
rs4744499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744515	0.81[EUR][1000 genomes]
rs62558472	0.83[EUR][1000 genomes]
rs62558473	0.83[EUR][1000 genomes]
rs662867	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7027794	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92764200-92771200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr9:92765200-92771400	Weak transcription	Colonic Mucosa	Colon
3	chr9:92765800-92775200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr9:92768000-92774800	Weak transcription	Fetal Intestine Small	intestine
5	chr9:92769000-92771400	Enhancers	Primary B cells from cord blood	blood
6	chr9:92769000-92771600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:92769000-92771800	Enhancers	HSMMtube	muscle
8	chr9:92769000-92772000	Enhancers	Fetal Muscle Leg	muscle
9	chr9:92769000-92773400	Enhancers	Primary B cells from peripheral blood	blood
10	chr9:92769200-92770800	Enhancers	Placenta	Placenta
11	chr9:92769200-92770800	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr9:92769200-92771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:92769600-92770800	Enhancers	Adipose Nuclei	Adipose
14	chr9:92769600-92770800	Enhancers	Colon Smooth Muscle	Colon
15	chr9:92769600-92770800	Enhancers	Placenta Amnion	Placenta Amnion
16	chr9:92769600-92770800	Enhancers	Stomach Smooth Muscle	stomach
17	chr9:92769600-92770800	Enhancers	NH-A	brain
18	chr9:92769600-92771000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:92769600-92771200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr9:92769600-92772000	Enhancers	Stomach Mucosa	stomach
21	chr9:92769800-92770600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr9:92769800-92770600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr9:92769800-92770600	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr9:92769800-92770600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr9:92769800-92770600	Enhancers	NHEK	skin
26	chr9:92769800-92770600	Flanking Active TSS	Osteobl	bone
27	chr9:92769800-92770800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr9:92769800-92770800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:92769800-92770800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:92769800-92770800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:92769800-92770800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:92769800-92770800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:92769800-92770800	Enhancers	Fetal Intestine Large	intestine
34	chr9:92769800-92770800	Enhancers	Ovary	ovary
35	chr9:92769800-92770800	Enhancers	Rectal Smooth Muscle	rectum
36	chr9:92769800-92770800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr9:92769800-92770800	Enhancers	NHLF	lung
38	chr9:92769800-92771000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr9:92769800-92771000	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr9:92769800-92771200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:92770000-92770600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr9:92770000-92770600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr9:92770000-92770600	Enhancers	Fetal Stomach	stomach
44	chr9:92770000-92770800	Enhancers	H9 Cell Line	embryonic stem cell
45	chr9:92770000-92770800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:92770000-92770800	Enhancers	Psoas Muscle	Psoas
47	chr9:92770000-92770800	Enhancers	HMEC	breast
48	chr9:92770000-92771000	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr9:92770000-92772200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr9:92770000-92773200	Enhancers	Primary hematopoietic stem cells	blood

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