Variant report

Variant	rs62558472
Chromosome Location	chr9:92780524-92780525
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92779076..92781069-chr9:92783497..92785199,2	MCF-7	breast:
2	chr9:92779670..92782151-chr9:92784242..92786135,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263967	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10116454	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10991740	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991751	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991758	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991799	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991807	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991819	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10993743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12685781	0.82[EUR][1000 genomes]
rs13299384	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13301471	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16906087	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16906093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34473649	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35752917	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744002	0.82[EUR][1000 genomes]
rs4744025	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744027	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744499	0.82[EUR][1000 genomes]
rs4744515	0.94[EUR][1000 genomes]
rs62558473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662867	0.82[EUR][1000 genomes]
rs9650758	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92771800-92781400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:92772200-92780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:92773800-92780800	Weak transcription	Primary B cells from cord blood	blood
4	chr9:92775800-92780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:92775800-92780600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:92775800-92780800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr9:92775800-92780800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:92775800-92781200	Weak transcription	HSMMtube	muscle
9	chr9:92776800-92787200	Weak transcription	Esophagus	oesophagus
10	chr9:92777800-92782600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:92778000-92781400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:92778800-92781600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:92780400-92780600	Enhancers	Lung	lung
14	chr9:92780400-92781600	Enhancers	Primary B cells from peripheral blood	blood

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