Variant report

Variant	rs10993743
Chromosome Location	chr9:92775074-92775075
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:92774758..92776459-chr9:92788172..92789725,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10116454	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10991740	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10991742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10991751	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10991758	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10991799	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991807	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991819	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10993742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12685781	0.82[EUR][1000 genomes]
rs13299384	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13301471	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16906087	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16906093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34473649	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35752917	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744002	0.82[EUR][1000 genomes]
rs4744025	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744027	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4744499	0.82[EUR][1000 genomes]
rs4744515	0.94[EUR][1000 genomes]
rs62558472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62558473	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs662867	0.82[EUR][1000 genomes]
rs9650758	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893561	chr9:92732368-92802101	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv482303	chr9:92752928-92890226	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:92765800-92775200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr9:92770800-92775400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr9:92771800-92775400	Weak transcription	HSMMtube	muscle
4	chr9:92771800-92776400	Weak transcription	HSMM	muscle
5	chr9:92771800-92781400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr9:92772000-92775200	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:92772000-92775200	Weak transcription	Stomach Mucosa	stomach
8	chr9:92772200-92780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:92772400-92775200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr9:92772600-92775200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:92773000-92775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:92773000-92775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:92773400-92780400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:92773800-92780800	Weak transcription	Primary B cells from cord blood	blood
15	chr9:92774800-92776000	Enhancers	Fetal Intestine Large	intestine
16	chr9:92774800-92776000	Enhancers	Fetal Intestine Small	intestine
17	chr9:92775000-92775800	Enhancers	Liver	Liver
18	chr9:92775000-92776200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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